This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 77a8749e618b6e72f34a0015de77ff97abd463e0 |
| Nextflow | 25.10.2 |
| TACA | bd31f2be5f6d347a22e31304458c20291024a08d |
| taca-ngi-pipeline | 02863df7400bf466d3a28f10527e1155c9cfb553 |
| flowcell_parser | 286b54825a83ef5cfed5345752f56b7e93265a1a |
| NGI, ngi_reports | 055e293bcd9854e021e0d01c183c30cf7f3ba81a |
| NGI, MultiQC | v1.31 |
| NGI, MultiQC_NGI | 0.9.4 |
| rnaseq | v3.12.0_ngi_v2 |
| sarek | 3.5.1 |
| methylseq | 4.2.0 |
| ampliseq | 2.12.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.7.0 |
| pixelator | 2.3.0 |
| nf-core | 3.2.0 |
| standalone_scripts | master, 7aa46e54c739fad0e27a4e61e75a1c24ead234d0 |
| jq | 1.5 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (260122.526aeb2-bimonthly)
Deployed at 2026-01-22T11:10:25Z, miarka_provision (bimonthly.v25.11-24-g526aeb2.526aeb2), by matildaa
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 77a8749e618b6e72f34a0015de77ff97abd463e0 |
| Nextflow | 25.10.2 |
| Kong | 2.6.0 |
| TACA | bd31f2be5f6d347a22e31304458c20291024a08d |
| taca-ngi-pipeline | 02863df7400bf466d3a28f10527e1155c9cfb553 |
| flowcell_parser | 286b54825a83ef5cfed5345752f56b7e93265a1a |
| NGI, ngi_reports | 055e293bcd9854e021e0d01c183c30cf7f3ba81a |
| NGI, MultiQC | v1.31 |
| NGI, MultiQC_NGI | 0.9.4 |
| arteria-checksum-ws | v1.1.0-rc1 |
| arteria-checkqc-ws | v4.1.1-rc1 |
| arteria-delivery-ws | v3.4.0-rc1 |
| rnaseq | v3.12.0_ngi_v2 |
| sarek | 3.5.1 |
| methylseq | 4.2.0 |
| ampliseq | 2.12.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.7.0 |
| pixelator | 2.3.0 |
| nf-core | 3.2.0 |
| arteria-sequencing-report-ws | v1.6.0-rc3 |
| snpseq-metadata-service | 1.2.0 |
| snpseq_metadata | v2.2.0 |
| upps_standalone_scripts | master, 15cc3e55d77b959d28669486a50941231112094e |
| jq | 1.5 |
| archive-upload-ws | v1.1.1 |
| archive-verify-ws | v1.2.1 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (260122.526aeb2-bimonthly)
Deployed at 2026-01-22T10:12:40Z, miarka_provision (bimonthly.v25.11-24-g526aeb2.526aeb2), by matildaa
Last Updated: 14th January 2022