This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 3697766dfa9d9f5482bfe914638be3b1188daac0 |
| Nextflow | 25.10.2 |
| NGI, scilifelab-metadata-templates | 00db6841eb767aeef4f809020aa497713536e3eb |
| TACA | 1627c5c5afa7b71ede1d6e279066bded7213bd4e |
| taca-ngi-pipeline | 933602459ab7b348474d0d8c52136d0b103df410 |
| flowcell_parser | 286b54825a83ef5cfed5345752f56b7e93265a1a |
| NGI, ngi_reports | 7100e34581430b2a1e3a9f00abc11cbfb5f19c72 |
| NGI, MultiQC | v1.35 |
| NGI, MultiQC_NGI | 0.9.5 |
| rnaseq | v3.12.0_ngi_v2 |
| sarek | 3.8.1 |
| methylseq | 4.2.0 |
| ampliseq | 2.12.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.7.0 |
| pixelator | 2.3.0 |
| seqinspector | 1.1.1 |
| nf-core | 3.2.0 |
| standalone_scripts | master, 7aa46e54c739fad0e27a4e61e75a1c24ead234d0 |
| jq | 1.5 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (260826.62803ee)
Deployed at 2026-08-26T13:04:57Z, miarka_provision (monthly.v26.05-28-g62803ee.62803ee), by matildaa
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 3697766dfa9d9f5482bfe914638be3b1188daac0 |
| Nextflow | 25.10.2 |
| Kong | 3.9.1 |
| NGI, scilifelab-metadata-templates | 00db6841eb767aeef4f809020aa497713536e3eb |
| TACA | 1627c5c5afa7b71ede1d6e279066bded7213bd4e |
| taca-ngi-pipeline | 933602459ab7b348474d0d8c52136d0b103df410 |
| flowcell_parser | 286b54825a83ef5cfed5345752f56b7e93265a1a |
| NGI, ngi_reports | 7100e34581430b2a1e3a9f00abc11cbfb5f19c72 |
| NGI, MultiQC | v1.35 |
| NGI, MultiQC_NGI | 0.9.5 |
| arteria-checksum-ws | v1.1.0-rc1 |
| arteria-checkqc-ws | v4.1.1-rc1 |
| arteria-delivery-ws | v3.4.1 |
| rnaseq | v3.12.0_ngi_v2 |
| sarek | 3.8.1 |
| methylseq | 4.2.0 |
| ampliseq | 2.12.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.7.0 |
| pixelator | 2.3.0 |
| seqinspector | 1.1.1 |
| nf-core | 3.2.0 |
| arteria-sequencing-report-ws | v1.6.0-rc4 |
| snpseq-metadata-service | 1.2.0 |
| snpseq_metadata | v2.2.0 |
| upps_standalone_scripts | master, 80e87c4d51f2739cf78fcac1b03ac02cdb607607 |
| jq | 1.5 |
| archive-upload-ws | v1.1.1 |
| archive-verify-ws | v1.2.1 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (260826.62803ee)
Deployed at 2026-08-26T12:28:44Z, miarka_provision (monthly.v26.05-28-g62803ee.62803ee), by matildaa
Last Updated: 14th January 2022