This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 63c6bf8e9f54c4b699f7299ffa6b7048be32b8d4 |
| Nextflow | 24.10.4 |
| TACA | 2047818010f1e61d8d7fa4ef905acc2bc7beb6c8 |
| taca-ngi-pipeline | 29058df1958ba75a34e268cac79a2f38bef8195b |
| flowcell_parser | 0d0b8e781daf71d782b95201c4ec2d3c5ef02fb7 |
| NGI, ngi_reports | e34a0df1a56f30adc1b81d6dfb127c6d1647b743 |
| NGI, MultiQC | v1.26 |
| NGI, MultiQC_NGI | 0.9.2 |
| rnaseq | v3.12.0_ngi_v1-rc1 |
| sarek | 3.5.1 |
| methylseq | 3.0.0 |
| ampliseq | 2.12.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.5.4 |
| nf-core | 3.2.0 |
| standalone_scripts | master, 146fab889b798525c2052046429f26d6bb002bf0 |
| jq | 1.5 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (250429.522b612)
Deployed at 2025-04-29T10:40:38Z, miarka_provision (monthly.v25.01-60-g522b612.522b612), by stelo
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 63c6bf8e9f54c4b699f7299ffa6b7048be32b8d4 |
| Nextflow | 24.04.2 |
| Kong | 2.6.0 |
| TACA | 2047818010f1e61d8d7fa4ef905acc2bc7beb6c8 |
| taca-ngi-pipeline | 6715a4b4f26bd4a88fd2a04a04a2feb1937a9d76 |
| flowcell_parser | 0d0b8e781daf71d782b95201c4ec2d3c5ef02fb7 |
| NGI, ngi_reports | c323458b3907b75441f3d81593e4dda37c4c53ae |
| NGI, MultiQC | v1.26 |
| NGI, MultiQC_NGI | 0.9.2 |
| arteria-checksum-ws | v1.0.4 |
| arteria-checkqc-ws | v4.0.5 |
| arteria-delivery-ws | v3.2.2-rc2 |
| rnaseq | 3.8.1 |
| sarek | 3.4.2 |
| methylseq | 2.3.0 |
| ampliseq | 2.5.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.5.4 |
| nf-core | 2.14.1 |
| arteria-sequencing-report-ws | v1.5.2 |
| snpseq-metadata-service | 1.2.0 |
| snpseq_metadata | v2.2.0 |
| upps_standalone_scripts | master, ad918f9edda3184f3cc0adcd673a3f8cfd4c8e8f |
| jq | 1.5 |
| archive-upload-ws | v1.1.1 |
| archive-verify-ws | v1.2.1 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: production (v25.03)
Deployed at 2025-04-03T10:32:09Z, miarka_provision (HEAD.v25.03.b77e368), by stelo
Last Updated: 14th January 2022