High-throughput full-genome or targeted sequencing of DNA from organisms with an existing reference genome.
Sequencing of the 16S gene to study bacterial diversity and composition in a sample.
library preparation illumina 16S amplicon targetedSequencing of PCR amplicons to study genetic variation within small target regions.
library preparation illumina 16S amplicon targetedLow cost library preparation option for gDNA based on bead-linked transposase. Only for full plates of samples.
normalization library preparation genome illumina WGS dna nexteraGold standard method for shotgun DNA libraries used for whole genome sequencing and metagenomics.
library preparation truseq genome illumina WGS dnaLibrary preparation from limited input DNA, used in whole genome sequencing and metagenomics etc.
library preparation truseq genome illumina WGS dnaLibrary preparation for DNA, ideal for preparing libraries from small amounts of input material. Works well for shotgun libraries, ChIP DNA and FFPE samples, amongst others.
library preparation genome illumina WGS dnaIon Torrent semiconductor sequencing technology is as simple as it is fast.
ion torrent s5 amplicon ampliseqNanopore instruments can sequence very long continuous fragments of DNA. Sequencing native DNA allows detection of base modifications.
assembly long-read nanoporePacBio SMRT sequencing generates reads tens of kilobases in length enabling high quality genome assembly, structural variant analysis, amplicon resequencing, full-length transcript isoform sequencing, full-length 16S rRNA sequencing and amplification free epigenetic characterization.
assembly methylation smrt pacbio amplicon sequel hifi clr de novo iso seq svGenotyping-by-sequencing without prior genome information.
library preparation genome illumina wholegenome dna polymorphismA platform for human whole exome sequencing (WES) using target enrichment and library preparation for next generation sequencing.
library preparation illumina dna exome targetedIon Torrent data handling and analysis
ampliseq Torrent Suite Ion ReporterQuality control, Basecalling and multiplexing of sequencing reads generated by Oxford Nanopore sequencers.
long-read nanoporeAnalysis applications provided by NGI using PacBio’s open-source SMRT Analysis software suite.
assembly structural variation base modifications pacbio iso-seq ccs hifi resequencingAdditional compute intensive nanopore raw data processing services provided by NGI
methylation base modifications basecalling fast5Basic quality-control monitoring of Illumina FastQ sequence data.
QC fastqc fastq screen checkqcRuns with illumina human DNA-sequencing data. This goes through alignment, alignment quality control, data processing, variant calling, and variant filtration.
piper wholegenome WGS sarekRuns with illumina DNA-sequencing data, WGS or targeted sequencing. Aligns to the reference genome, gives QC metrics, does variant-calling and finishes with annotation.
WGS sarek cancer human data