NGI Sweden Order Portal

NGI Sweden Order Portal

This portal is for submitting orders for services provided by the National Genomics Infrastructure Sweden (NGI). To make an order, please log in and choose the application most suitable for your project. If uncertain about the choice of technology, please select the “Request a meeting” option. You can read more about the different technologies and How to place an order under "Information" in the menu at the top of the page.

Projects from other countries are admissible, but have lower priority than projects performed by researchers based in Sweden. Depending on the queue situation, NGI may decide to decline a non-Swedish project altogether.

Status Turn Around Times and Status for the Stockholm node.


Request a meeting

If you are unsure about the appropriate method for your scientific problem, request a meeting for a discussion with us.

Illumina Sequencing

Order form for Illumina sequencing.

Ion Sequencing

Order form for sequencing by Ion Proton or Ion S5XL.

PacBio Sequencing

Order form for PacBio sequencing. This is available only at the NGI Uppsala UGC node.

Genotyping and array-based epityping

Order form for genotyping and DNA methylation analysis using the Illumina EPIC beadchip.

Recent news All news
New sequencing system (2017-07-12)

The NovaSeq6000 sequencing system (Illumina Inc.) is now installed at the NGI facilities in Uppsala and Stockholm.

The NovaSeq, launched by Illumina early 2017, offers high-throughput sequencing across the full range of DNA- and RNA-sequencing applications including transcriptome profiling, target re-sequencing, low coverage genome sequencing and single cell applications. By acquiring the NovaSeq6000 NGI will continue to offer the most cost efficient sequencing service to our users. Whole genome sequencing at a coverage of at least 15x will continue to be run on HiSeqX as the most cost efficient approach. During the summer and beginning of the fall, the NovaSeq systems will be validated and NGI aims to accept projects from users from September 2017. Projects already submitted and scheduled for HiSeq2500 may be transferred to the NovaSeq, in those cases the NGI project coordinators will contact the user for a discussion. You can read more about the NovaSeq system at the Illumina website.

New data delivery system (2017-06-21)

In mid-June, NGI will start introducing a new, secure system for delivering sequence and genotype data to users. With this new system, once your project is ready, you will be given access to a secure delivery server where your data will be available for download for a limited period of time.

For more information, please visit the Data delivery webpage

Summer Holiday Period 2017 (2017-05-22)

Order processing and sample submission will be closed during summer. Library preparation and sequencing will continue at reduced pace.

  • Orders submitted will be closed from June 22 to August 7
  • Sample submission will be closed from July 3 to August 7. (Last day for sample submission is June 30).
SciLifeLab offers funding for national genomics studies (2017-04-26)

SciLifeLab welcomes applications for Swedish research projects based on next generation DNA sequencing. In total, this third call will provide 30 million SEK in support for sequence analysis of unique and well-characterized sample collections to study either the genetic basis of disease or environmental effects on biodiversity.

Please go to this link for further instructions on how to apply.

Upcoming events All events
Currently none. Check again later.

NGI Sweden is hosted by Science for Life Laboratory (SciLifeLab). See the NGI pages at the SciLifeLab web site for more information.

NGI includes facilities established by profs Ulf Gyllensten (Uppsala), Ann-Christine Syvänen (Uppsala) and Joakim Lundeberg (Stockholm). The National Genomics Infrastructure (NGI) was launched January 1st 2013. It originates from the VR RFI infrastructure SNISS.

NGI is supported by SciLifeLab, the Swedish Research Council (Vetenskapsrådet, VR) and host universities (KI, KTH, SU, UU). In addition, the Knut and Alice Wallenberg Foundation (KAW) has provided funding for instruments and computational infrastructure.