This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | ca6a223245da41759b366332a74cb287b05a2fc2 |
| Nextflow | 25.10.2 |
| NGI, scilifelab-metadata-templates | 00db6841eb767aeef4f809020aa497713536e3eb |
| TACA | cc2da6b8df55ef7419a3accebf7c9a33ab8e4d9e |
| taca-ngi-pipeline | 3c9f542e6dc4e04819d2f5e69bbe2620fe3745a8 |
| flowcell_parser | 286b54825a83ef5cfed5345752f56b7e93265a1a |
| NGI, ngi_reports | 735c42ab32570e21e0876518a3140513234daaaf |
| NGI, MultiQC | v1.35 |
| NGI, MultiQC_NGI | 0.9.5 |
| rnaseq | v3.12.0_ngi_v2 |
| sarek | 3.8.1 |
| methylseq | 4.2.0 |
| ampliseq | 2.12.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.7.0 |
| pixelator | 2.3.0 |
| seqinspector | 1.1.1 |
| nf-core | 3.2.0 |
| standalone_scripts | master, 7aa46e54c739fad0e27a4e61e75a1c24ead234d0 |
| jq | 1.5 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (261015.469081e)
Deployed at 2026-10-15T06:29:08Z, miarka_provision (monthly.v26.09-12-g469081e.469081e), by sjunnebo
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | ca6a223245da41759b366332a74cb287b05a2fc2 |
| Nextflow | 25.10.2 |
| Kong | 3.9.1 |
| NGI, scilifelab-metadata-templates | 00db6841eb767aeef4f809020aa497713536e3eb |
| TACA | cc2da6b8df55ef7419a3accebf7c9a33ab8e4d9e |
| taca-ngi-pipeline | 3c9f542e6dc4e04819d2f5e69bbe2620fe3745a8 |
| flowcell_parser | 286b54825a83ef5cfed5345752f56b7e93265a1a |
| NGI, ngi_reports | 735c42ab32570e21e0876518a3140513234daaaf |
| NGI, MultiQC | v1.35 |
| NGI, MultiQC_NGI | 0.9.5 |
| arteria-checksum-ws | v1.1.0-rc1 |
| arteria-checkqc-ws | v4.1.2 |
| arteria-delivery-ws | v3.4.1 |
| rnaseq | v3.12.0_ngi_v2 |
| sarek | 3.8.1 |
| methylseq | 4.2.0 |
| ampliseq | 2.12.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.7.0 |
| pixelator | 2.3.0 |
| seqinspector | 1.1.1 |
| nf-core | 3.2.0 |
| arteria-sequencing-report-ws | v1.6.0-rc4 |
| snpseq-metadata-service | 1.2.0 |
| snpseq_metadata | v2.2.0 |
| upps_standalone_scripts | master, 80e87c4d51f2739cf78fcac1b03ac02cdb607607 |
| jq | 1.5 |
| archive-upload-ws | v1.1.1 |
| archive-verify-ws | v1.2.1 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (261015.469081e)
Deployed at 2026-10-15T06:12:36Z, miarka_provision (monthly.v26.09-12-g469081e.469081e), by sjunnebo
Last Updated: 14th January 2022