Software tool versions

This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.

This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.

Stockholm node
ToolVersion
NGI Pipelinec45b61a4ffc246745a558774f4ca74167eec8767
Nextflow21.10.6
TACA0a0d52e7a302348231816e99581af866fcfb696b
taca-ngi-pipeline8a70c20d7dd5ab9c3c26d7da2897ba947a830ec3
flowcell_parser4ec4331bf6f968bb4a83b00c9c111d87823049de
NGI, ngi_reportsfab25b4d3f81744b02584b301ce610e58e853c50
NGI, ngi_visualizationsbf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0
NGI, MultiQCv1.11
NGI, MultiQC_NGI0.6.6
standalone_scriptsmaster, d7cbea256c7d56968dc830055b69df1d2df9f58b
deliverybd7f23d453368ec389725dfa09199c2f0c95b882
jq1.5
rnaseq3.3
sarek2.7
methylseq1.6.1
ampliseq2.0.0
atacseq1.2.1
viralrecon2.2
rnafusion2.0.0
nanoseq1.1.0
nf-core2.1
dds-cli1.0.5

Deployment type: staging (220613.ff383b8)

Deployed at 2022-06-13T13:11:45Z, miarka_provision (monthly.v22.05-2-9-gff383b8.ff383b8), by stelo

Uppsala node
ToolVersion
NGI Pipelinec45b61a4ffc246745a558774f4ca74167eec8767
Nextflow21.10.6
Kong2.6.0
TACA0a0d52e7a302348231816e99581af866fcfb696b
taca-ngi-pipeline8a70c20d7dd5ab9c3c26d7da2897ba947a830ec3
flowcell_parser4ec4331bf6f968bb4a83b00c9c111d87823049de
NGI, ngi_reportsfab25b4d3f81744b02584b301ce610e58e853c50
NGI, ngi_visualizationsbf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0
NGI, MultiQCv1.11
NGI, MultiQC_NGI0.6.6
arteria-checksum-wsv1.0.4
arteria-delivery-wsv2.4.1
upps_standalone_scriptsmaster, a2b98326d3d497ef36bc890023c83c3d0227ab7c
deliverybd7f23d453368ec389725dfa09199c2f0c95b882
jq1.5
archive-upload-wsv1.0.4
rnaseq3.3
sarek2.7
methylseq1.6.1
ampliseq2.0.0
atacseq1.2.1
viralrecon2.2
rnafusion2.0.0
nanoseq1.1.0
nf-core2.1
dds-cli1.0.5

Deployment type: staging (220613.ff383b8)

Deployed at 2022-06-13T12:38:08Z, miarka_provision (monthly.v22.05-2-9-gff383b8.ff383b8), by stelo

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