Software tool versions

This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.

This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.

Stockholm node
ToolVersion
Anacondaconda 4.10.1
NGI Pipelinecad27a2c4d68c049514be7ea78e16ad218922104
Nextflow22.10.6
TACAd14323ac72bef8731a6da10bfe056cc08cad3709
taca-ngi-pipelineac0abf07b40fec8ff8b8e5918eb7fcb28c9fd3dd
flowcell_parser322abe3ea3bbd4aca1abf090dd51df0c5eca3db2
NGI, ngi_reports32e1aec482aaebfafd460a3eda888f0477d6ab68
NGI, ngi_visualizationsbf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0
NGI, MultiQCv1.15
NGI, MultiQC_NGI0.7.1
rnaseq3.3
sarek2.7
methylseq2.3.0
ampliseq2.5.0
atacseq2.0
viralrecon2.6.0
rnafusion2.3.4
nanoseq3.1.0
scrnaseq2.3.0
nf-core2.7.2
standalone_scriptsmaster, cc3c6c13395d463b21764a2c7d3e950a002ff21a
deliverybd7f23d453368ec389725dfa09199c2f0c95b882
jq1.5
NGI, Kraken22.1.2

Deployment type: production (v23.09)

Deployed at 2023-09-25T09:41:14Z, miarka_provision (HEAD.v23.09.bfb1583), by pontusla

Uppsala node
ToolVersion
Anacondaconda 4.10.1
NGI Pipelinecad27a2c4d68c049514be7ea78e16ad218922104
Nextflow22.10.6
Kong2.6.0
TACAd14323ac72bef8731a6da10bfe056cc08cad3709
taca-ngi-pipelineac0abf07b40fec8ff8b8e5918eb7fcb28c9fd3dd
flowcell_parser322abe3ea3bbd4aca1abf090dd51df0c5eca3db2
NGI, ngi_reports32e1aec482aaebfafd460a3eda888f0477d6ab68
NGI, ngi_visualizationsbf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0
NGI, MultiQCv1.15
NGI, MultiQC_NGI0.7.1
arteria-checksum-wsv1.0.4
arteria-delivery-wsv3.0.1
rnaseq3.3
sarek2.7
methylseq2.3.0
ampliseq2.5.0
atacseq2.0
viralrecon2.6.0
rnafusion2.3.4
nanoseq3.1.0
scrnaseq2.3.0
nf-core2.7.2
arteria-sequencing-report-wsv1.4.0-rc1
upps_standalone_scriptsmaster, 739b4431a6bc9d0b53c9969f8c066f2c43da092e
deliverybd7f23d453368ec389725dfa09199c2f0c95b882
jq1.5
archive-upload-wsv1.0.4
archive-verify-wsv1.1.0-rc1
NGI, Kraken22.1.2

Deployment type: production (v23.09)

Deployed at 2023-09-25T09:27:16Z, miarka_provision (HEAD.v23.09.bfb1583), by pontusla






Last Updated: 14th January 2022