This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| NGI Pipeline | c45b61a4ffc246745a558774f4ca74167eec8767 |
| Nextflow | 21.10.6 |
| TACA | 0a0d52e7a302348231816e99581af866fcfb696b |
| taca-ngi-pipeline | 8a70c20d7dd5ab9c3c26d7da2897ba947a830ec3 |
| flowcell_parser | 4ec4331bf6f968bb4a83b00c9c111d87823049de |
| NGI, ngi_reports | fab25b4d3f81744b02584b301ce610e58e853c50 |
| NGI, ngi_visualizations | bf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0 |
| NGI, MultiQC | v1.11 |
| NGI, MultiQC_NGI | 0.6.6 |
| standalone_scripts | master, d7cbea256c7d56968dc830055b69df1d2df9f58b |
| delivery | bd7f23d453368ec389725dfa09199c2f0c95b882 |
| jq | 1.5 |
| rnaseq | 3.3 |
| sarek | 2.7 |
| methylseq | 1.6.1 |
| ampliseq | 2.0.0 |
| atacseq | 1.2.1 |
| viralrecon | 2.2 |
| rnafusion | 2.0.0 |
| nanoseq | 1.1.0 |
| nf-core | 2.1 |
| dds-cli | 1.0.5 |
Deployment type: staging (220613.ff383b8)
Deployed at 2022-06-13T13:11:45Z, miarka_provision (monthly.v22.05-2-9-gff383b8.ff383b8), by stelo
| Tool | Version |
|---|---|
| NGI Pipeline | c45b61a4ffc246745a558774f4ca74167eec8767 |
| Nextflow | 21.10.6 |
| Kong | 2.6.0 |
| TACA | 0a0d52e7a302348231816e99581af866fcfb696b |
| taca-ngi-pipeline | 8a70c20d7dd5ab9c3c26d7da2897ba947a830ec3 |
| flowcell_parser | 4ec4331bf6f968bb4a83b00c9c111d87823049de |
| NGI, ngi_reports | fab25b4d3f81744b02584b301ce610e58e853c50 |
| NGI, ngi_visualizations | bf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0 |
| NGI, MultiQC | v1.11 |
| NGI, MultiQC_NGI | 0.6.6 |
| arteria-checksum-ws | v1.0.4 |
| arteria-delivery-ws | v2.4.1 |
| upps_standalone_scripts | master, a2b98326d3d497ef36bc890023c83c3d0227ab7c |
| delivery | bd7f23d453368ec389725dfa09199c2f0c95b882 |
| jq | 1.5 |
| archive-upload-ws | v1.0.4 |
| rnaseq | 3.3 |
| sarek | 2.7 |
| methylseq | 1.6.1 |
| ampliseq | 2.0.0 |
| atacseq | 1.2.1 |
| viralrecon | 2.2 |
| rnafusion | 2.0.0 |
| nanoseq | 1.1.0 |
| nf-core | 2.1 |
| dds-cli | 1.0.5 |
Deployment type: staging (220613.ff383b8)
Deployed at 2022-06-13T12:38:08Z, miarka_provision (monthly.v22.05-2-9-gff383b8.ff383b8), by stelo