This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| NGI Pipeline | b8b20c9cb7e53d852842336e2c299d640d6cfce1 |
| Nextflow | 21.10.6 |
| TACA | d99a7f3f63fc30cb7ba413279106456aa0daa1d8 |
| taca-ngi-pipeline | 4bc5b87ab648254887fb5ef8dd815e73c36bc554 |
| flowcell_parser | f23781c395b80b343f777aa7b0204dafafaea8ea |
| NGI, ngi_reports | 1b765e674698bb776d6144598cc190cbfe5dc887 |
| NGI, ngi_visualizations | bf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0 |
| NGI, MultiQC | v1.13 |
| NGI, MultiQC_NGI | 0.6.7 |
| standalone_scripts | master, 755b096907e202f3de70075c7802f977985bff52 |
| delivery | bd7f23d453368ec389725dfa09199c2f0c95b882 |
| jq | 1.5 |
| rnaseq | 3.3 |
| sarek | 2.7 |
| methylseq | 1.6.1 |
| ampliseq | 2.0.0 |
| atacseq | 1.2.1 |
| viralrecon | 2.2 |
| rnafusion | 2.1.0 |
| nanoseq | 3.0.0 |
| scrnaseq | 2.0.0 |
| nf-core | 2.4.1 |
Deployment type: staging (221121.7c74c3c)
Deployed at 2022-11-21T09:43:58Z, miarka_provision (monthly.v22.10-19-g7c74c3c.7c74c3c), by sjunnebo
| Tool | Version |
|---|---|
| NGI Pipeline | b8b20c9cb7e53d852842336e2c299d640d6cfce1 |
| Nextflow | 21.10.6 |
| Kong | 2.6.0 |
| TACA | d99a7f3f63fc30cb7ba413279106456aa0daa1d8 |
| taca-ngi-pipeline | 4bc5b87ab648254887fb5ef8dd815e73c36bc554 |
| flowcell_parser | f23781c395b80b343f777aa7b0204dafafaea8ea |
| NGI, ngi_reports | 1b765e674698bb776d6144598cc190cbfe5dc887 |
| NGI, ngi_visualizations | bf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0 |
| NGI, MultiQC | v1.13 |
| NGI, MultiQC_NGI | 0.6.7 |
| arteria-checksum-ws | v1.0.4 |
| arteria-delivery-ws | v3.0.0-rc2 |
| upps_standalone_scripts | master, 739b4431a6bc9d0b53c9969f8c066f2c43da092e |
| delivery | bd7f23d453368ec389725dfa09199c2f0c95b882 |
| jq | 1.5 |
| archive-upload-ws | v1.0.4 |
| rnaseq | 3.3 |
| sarek | 2.7 |
| methylseq | 1.6.1 |
| ampliseq | 2.0.0 |
| atacseq | 1.2.1 |
| viralrecon | 2.2 |
| rnafusion | 2.1.0 |
| nanoseq | 3.0.0 |
| scrnaseq | 2.0.0 |
| nf-core | 2.4.1 |
Deployment type: staging (221121.7c74c3c)
Deployed at 2022-11-21T09:31:20Z, miarka_provision (monthly.v22.10-19-g7c74c3c.7c74c3c), by sjunnebo