Software tool versions

This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.

This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.

Stockholm node
ToolVersion
Anacondaconda 24.7.1
NGI Pipeline63c6bf8e9f54c4b699f7299ffa6b7048be32b8d4
Nextflow24.10.4
TACA2047818010f1e61d8d7fa4ef905acc2bc7beb6c8
taca-ngi-pipeline29058df1958ba75a34e268cac79a2f38bef8195b
flowcell_parser0d0b8e781daf71d782b95201c4ec2d3c5ef02fb7
NGI, ngi_reportse34a0df1a56f30adc1b81d6dfb127c6d1647b743
NGI, MultiQCv1.26
NGI, MultiQC_NGI0.9.2
rnaseqv3.12.0_ngi_v1-rc1
sarek3.5.1
methylseq3.0.0
ampliseq2.12.0
atacseq2.0
viralrecon2.6.0
rnafusion2.3.4
nanoseq3.1.0
scrnaseq2.3.0
demultiplex1.5.4
nf-core3.2.0
standalone_scriptsmaster, 146fab889b798525c2052046429f26d6bb002bf0
jq1.5
NGI, Kraken22.1.2

Deployment type: staging (250429.522b612)

Deployed at 2025-04-29T10:40:38Z, miarka_provision (monthly.v25.01-60-g522b612.522b612), by stelo

Uppsala node
ToolVersion
Anacondaconda 24.7.1
NGI Pipeline63c6bf8e9f54c4b699f7299ffa6b7048be32b8d4
Nextflow24.10.4
Kong2.6.0
TACA2047818010f1e61d8d7fa4ef905acc2bc7beb6c8
taca-ngi-pipeline29058df1958ba75a34e268cac79a2f38bef8195b
flowcell_parser0d0b8e781daf71d782b95201c4ec2d3c5ef02fb7
NGI, ngi_reportse34a0df1a56f30adc1b81d6dfb127c6d1647b743
NGI, MultiQCv1.26
NGI, MultiQC_NGI0.9.2
arteria-checksum-wsv1.0.4
arteria-checkqc-wsv4.0.6
arteria-delivery-wsv3.2.2-rc2
rnaseqv3.12.0_ngi_v1-rc1
sarek3.5.1
methylseq3.0.0
ampliseq2.12.0
atacseq2.0
viralrecon2.6.0
rnafusion2.3.4
nanoseq3.1.0
scrnaseq2.3.0
demultiplex1.5.4
nf-core3.2.0
arteria-sequencing-report-wsv1.5.2
snpseq-metadata-service1.2.0
snpseq_metadatav2.2.0
upps_standalone_scriptsmaster, ad918f9edda3184f3cc0adcd673a3f8cfd4c8e8f
jq1.5
archive-upload-wsv1.1.1
archive-verify-wsv1.2.1
NGI, Kraken22.1.2

Deployment type: staging (250429.522b612)

Deployed at 2025-04-29T08:30:16Z, miarka_provision (monthly.v25.01-60-g522b612.522b612), by stelo

Last Updated: 14th January 2022