Software tool versions

This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.

This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.

Stockholm node
ToolVersion
NGI Pipelineb8b20c9cb7e53d852842336e2c299d640d6cfce1
Nextflow21.10.6
TACAd99a7f3f63fc30cb7ba413279106456aa0daa1d8
taca-ngi-pipeline4bc5b87ab648254887fb5ef8dd815e73c36bc554
flowcell_parserf23781c395b80b343f777aa7b0204dafafaea8ea
NGI, ngi_reports1b765e674698bb776d6144598cc190cbfe5dc887
NGI, ngi_visualizationsbf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0
NGI, MultiQCv1.13
NGI, MultiQC_NGI0.6.7
standalone_scriptsmaster, 755b096907e202f3de70075c7802f977985bff52
deliverybd7f23d453368ec389725dfa09199c2f0c95b882
jq1.5
rnaseq3.3
sarek2.7
methylseq1.6.1
ampliseq2.0.0
atacseq1.2.1
viralrecon2.2
rnafusion2.1.0
nanoseq3.0.0
scrnaseq2.0.0
nf-core2.4.1

Deployment type: staging (221121.7c74c3c)

Deployed at 2022-11-21T09:43:58Z, miarka_provision (monthly.v22.10-19-g7c74c3c.7c74c3c), by sjunnebo

Uppsala node
ToolVersion
NGI Pipelineb8b20c9cb7e53d852842336e2c299d640d6cfce1
Nextflow21.10.6
Kong2.6.0
TACAd99a7f3f63fc30cb7ba413279106456aa0daa1d8
taca-ngi-pipeline4bc5b87ab648254887fb5ef8dd815e73c36bc554
flowcell_parserf23781c395b80b343f777aa7b0204dafafaea8ea
NGI, ngi_reports1b765e674698bb776d6144598cc190cbfe5dc887
NGI, ngi_visualizationsbf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0
NGI, MultiQCv1.13
NGI, MultiQC_NGI0.6.7
arteria-checksum-wsv1.0.4
arteria-delivery-wsv3.0.0-rc2
upps_standalone_scriptsmaster, 739b4431a6bc9d0b53c9969f8c066f2c43da092e
deliverybd7f23d453368ec389725dfa09199c2f0c95b882
jq1.5
archive-upload-wsv1.0.4
rnaseq3.3
sarek2.7
methylseq1.6.1
ampliseq2.0.0
atacseq1.2.1
viralrecon2.2
rnafusion2.1.0
nanoseq3.0.0
scrnaseq2.0.0
nf-core2.4.1

Deployment type: staging (221121.7c74c3c)

Deployed at 2022-11-21T09:31:20Z, miarka_provision (monthly.v22.10-19-g7c74c3c.7c74c3c), by sjunnebo

Scroll to top