This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| Anaconda | conda 4.10.1 |
| NGI Pipeline | cad27a2c4d68c049514be7ea78e16ad218922104 |
| Nextflow | 22.10.6 |
| TACA | d14323ac72bef8731a6da10bfe056cc08cad3709 |
| taca-ngi-pipeline | ac0abf07b40fec8ff8b8e5918eb7fcb28c9fd3dd |
| flowcell_parser | 322abe3ea3bbd4aca1abf090dd51df0c5eca3db2 |
| NGI, ngi_reports | 32e1aec482aaebfafd460a3eda888f0477d6ab68 |
| NGI, ngi_visualizations | bf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0 |
| NGI, MultiQC | v1.15 |
| NGI, MultiQC_NGI | 0.7.1 |
| rnaseq | 3.3 |
| sarek | 2.7 |
| methylseq | 2.3.0 |
| ampliseq | 2.5.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| nf-core | 2.7.2 |
| standalone_scripts | master, cc3c6c13395d463b21764a2c7d3e950a002ff21a |
| delivery | bd7f23d453368ec389725dfa09199c2f0c95b882 |
| jq | 1.5 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: production (v23.09)
Deployed at 2023-09-25T09:41:14Z, miarka_provision (HEAD.v23.09.bfb1583), by pontusla
| Tool | Version |
|---|---|
| Anaconda | conda 4.10.1 |
| NGI Pipeline | cad27a2c4d68c049514be7ea78e16ad218922104 |
| Nextflow | 22.10.6 |
| Kong | 2.6.0 |
| TACA | d14323ac72bef8731a6da10bfe056cc08cad3709 |
| taca-ngi-pipeline | ac0abf07b40fec8ff8b8e5918eb7fcb28c9fd3dd |
| flowcell_parser | 322abe3ea3bbd4aca1abf090dd51df0c5eca3db2 |
| NGI, ngi_reports | 32e1aec482aaebfafd460a3eda888f0477d6ab68 |
| NGI, ngi_visualizations | bf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0 |
| NGI, MultiQC | v1.15 |
| NGI, MultiQC_NGI | 0.7.1 |
| arteria-checksum-ws | v1.0.4 |
| arteria-delivery-ws | v3.0.1 |
| rnaseq | 3.3 |
| sarek | 2.7 |
| methylseq | 2.3.0 |
| ampliseq | 2.5.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| nf-core | 2.7.2 |
| arteria-sequencing-report-ws | v1.4.0-rc1 |
| upps_standalone_scripts | master, 739b4431a6bc9d0b53c9969f8c066f2c43da092e |
| delivery | bd7f23d453368ec389725dfa09199c2f0c95b882 |
| jq | 1.5 |
| archive-upload-ws | v1.0.4 |
| archive-verify-ws | v1.1.0-rc1 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: production (v23.09)
Deployed at 2023-09-25T09:27:16Z, miarka_provision (HEAD.v23.09.bfb1583), by pontusla
Last Updated: 14th January 2022