This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| NGI Pipeline | b8b20c9cb7e53d852842336e2c299d640d6cfce1 |
| Nextflow | 21.10.6 |
| TACA | d99a7f3f63fc30cb7ba413279106456aa0daa1d8 |
| taca-ngi-pipeline | 4370e2aaf0979bd6ebd83cb38c851860e8b7cd3f |
| flowcell_parser | f23781c395b80b343f777aa7b0204dafafaea8ea |
| NGI, ngi_reports | 5f4b5ee054dc8389223ce152561febc6f1e4e60d |
| NGI, ngi_visualizations | bf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0 |
| NGI, MultiQC | v1.14 |
| NGI, MultiQC_NGI | 0.6.8 |
| standalone_scripts | master, 7717dae82f75885d12030e5b60b5baf12cce3451 |
| delivery | bd7f23d453368ec389725dfa09199c2f0c95b882 |
| jq | 1.5 |
| rnaseq | 3.3 |
| sarek | 2.7 |
| methylseq | 2.3.0 |
| ampliseq | 2.4.1 |
| atacseq | 2.0 |
| viralrecon | 2.5 |
| rnafusion | 2.1.0 |
| nanoseq | 3.0.0 |
| scrnaseq | 2.1.0 |
| nf-core | 2.4.1 |
Deployment type: production (v23.02)
Deployed at 2023-02-27T14:46:17Z, miarka_provision (HEAD.v23.02.6219ab1), by anan
| Tool | Version |
|---|---|
| NGI Pipeline | b8b20c9cb7e53d852842336e2c299d640d6cfce1 |
| Nextflow | 21.10.6 |
| Kong | 2.6.0 |
| TACA | d99a7f3f63fc30cb7ba413279106456aa0daa1d8 |
| taca-ngi-pipeline | 4370e2aaf0979bd6ebd83cb38c851860e8b7cd3f |
| flowcell_parser | f23781c395b80b343f777aa7b0204dafafaea8ea |
| NGI, ngi_reports | 5f4b5ee054dc8389223ce152561febc6f1e4e60d |
| NGI, ngi_visualizations | bf1892faf5ebe16ad0979cfc83f9c72b90e2a5a0 |
| NGI, MultiQC | v1.14 |
| NGI, MultiQC_NGI | 0.6.8 |
| arteria-checksum-ws | v1.0.4 |
| arteria-delivery-ws | v3.0.1 |
| upps_standalone_scripts | master, 739b4431a6bc9d0b53c9969f8c066f2c43da092e |
| delivery | bd7f23d453368ec389725dfa09199c2f0c95b882 |
| jq | 1.5 |
| archive-upload-ws | v1.0.4 |
| rnaseq | 3.3 |
| sarek | 2.7 |
| methylseq | 2.3.0 |
| ampliseq | 2.4.1 |
| atacseq | 2.0 |
| viralrecon | 2.5 |
| rnafusion | 2.1.0 |
| nanoseq | 3.0.0 |
| scrnaseq | 2.1.0 |
| nf-core | 2.4.1 |
Deployment type: production (v23.02)
Deployed at 2023-02-27T14:36:39Z, miarka_provision (HEAD.v23.02.6219ab1), by anan
Last Updated: 14th January 2022