This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 3697766dfa9d9f5482bfe914638be3b1188daac0 |
| Nextflow | 24.10.4 |
| TACA | 32b22336a4a5262d89fb60f37de249c5ad86945e |
| taca-ngi-pipeline | 02863df7400bf466d3a28f10527e1155c9cfb553 |
| flowcell_parser | 286b54825a83ef5cfed5345752f56b7e93265a1a |
| NGI, ngi_reports | ef72df303b4ef62f59bfda942133b8b70487b044 |
| NGI, MultiQC | v1.33 |
| NGI, MultiQC_NGI | 0.9.5 |
| rnaseq | v3.12.0_ngi_v1-rc1 |
| sarek | 3.5.1 |
| methylseq | 3.0.0 |
| ampliseq | 2.12.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.5.4 |
| nf-core | 3.2.0 |
| standalone_scripts | master, 7aa46e54c739fad0e27a4e61e75a1c24ead234d0 |
| jq | 1.5 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (260209.f581680)
Deployed at 2026-02-09T13:25:21Z, miarka_provision (monthly.v25.11-11-gf581680.f581680), by sjunnebo
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 3697766dfa9d9f5482bfe914638be3b1188daac0 |
| Nextflow | 24.10.4 |
| Kong | 2.6.0 |
| TACA | 32b22336a4a5262d89fb60f37de249c5ad86945e |
| taca-ngi-pipeline | 02863df7400bf466d3a28f10527e1155c9cfb553 |
| flowcell_parser | 286b54825a83ef5cfed5345752f56b7e93265a1a |
| NGI, ngi_reports | ef72df303b4ef62f59bfda942133b8b70487b044 |
| NGI, MultiQC | v1.33 |
| NGI, MultiQC_NGI | 0.9.5 |
| arteria-checksum-ws | v1.0.4 |
| arteria-checkqc-ws | v4.1.0 |
| arteria-delivery-ws | v3.3.0 |
| rnaseq | v3.12.0_ngi_v1-rc1 |
| sarek | 3.5.1 |
| methylseq | 3.0.0 |
| ampliseq | 2.12.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.5.4 |
| nf-core | 3.2.0 |
| arteria-sequencing-report-ws | v1.5.3-rc1 |
| snpseq-metadata-service | 1.2.0 |
| snpseq_metadata | v2.2.0 |
| upps_standalone_scripts | master, 15cc3e55d77b959d28669486a50941231112094e |
| jq | 1.5 |
| archive-upload-ws | v1.1.1 |
| archive-verify-ws | v1.2.1 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (260209.f581680)
Deployed at 2026-02-09T13:12:22Z, miarka_provision (monthly.v25.11-11-gf581680.f581680), by sjunnebo
Last Updated: 14th January 2022