This page lists the versions of the software tools currently deployed on our production server for bioinformatics analysis.
This page should only be used as a guide of what to expect. Please use the reported software versions in your data delivery as the definite record of what was used for your analysis.
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 084be9d502a63626dd5e3a2ca0f04d0a82055d2d |
| Nextflow | 24.04.2 |
| TACA | 3c6e004509cceb49f0fc1a8c3dc816862b90c8a7 |
| taca-ngi-pipeline | 6715a4b4f26bd4a88fd2a04a04a2feb1937a9d76 |
| flowcell_parser | 0d0b8e781daf71d782b95201c4ec2d3c5ef02fb7 |
| NGI, ngi_reports | eb0e986ac58908abf26ad574f0fa383cf49d7f86 |
| NGI, MultiQC | v1.27 |
| NGI, MultiQC_NGI | 0.9.3 |
| rnaseq | 3.8.1 |
| sarek | 3.4.2 |
| methylseq | 2.3.0 |
| ampliseq | 2.5.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.5.4 |
| nf-core | 2.14.1 |
| standalone_scripts | master, 63a151653e8fb13c72f92a7c7edfde747cea19ee |
| jq | 1.5 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (250127.3097bf2)
Deployed at 2025-01-27T10:49:52Z, miarka_provision (monthly.v24.11-41-g3097bf2.3097bf2), by sjunnebo
| Tool | Version |
|---|---|
| Anaconda | conda 24.7.1 |
| NGI Pipeline | 084be9d502a63626dd5e3a2ca0f04d0a82055d2d |
| Nextflow | 24.04.2 |
| Kong | 2.6.0 |
| TACA | 3c6e004509cceb49f0fc1a8c3dc816862b90c8a7 |
| taca-ngi-pipeline | 6715a4b4f26bd4a88fd2a04a04a2feb1937a9d76 |
| flowcell_parser | 0d0b8e781daf71d782b95201c4ec2d3c5ef02fb7 |
| NGI, ngi_reports | eb0e986ac58908abf26ad574f0fa383cf49d7f86 |
| NGI, MultiQC | v1.27 |
| NGI, MultiQC_NGI | 0.9.3 |
| arteria-checksum-ws | v1.0.4 |
| arteria-checkqc-ws | v4.0.5 |
| arteria-delivery-ws | v3.2.2-rc2 |
| rnaseq | 3.8.1 |
| sarek | 3.4.2 |
| methylseq | 2.3.0 |
| ampliseq | 2.5.0 |
| atacseq | 2.0 |
| viralrecon | 2.6.0 |
| rnafusion | 2.3.4 |
| nanoseq | 3.1.0 |
| scrnaseq | 2.3.0 |
| demultiplex | 1.5.4 |
| nf-core | 2.14.1 |
| arteria-sequencing-report-ws | v1.5.1-rc2 |
| snpseq-metadata-service | 1.2.0 |
| snpseq_metadata | v2.2.0 |
| upps_standalone_scripts | master, d97a0ca346f11c1e371cc20b3f2b1961f2a8b2f7 |
| jq | 1.5 |
| archive-upload-ws | v1.1.1 |
| archive-verify-ws | v1.2.1 |
| NGI, Kraken2 | 2.1.2 |
Deployment type: staging (250127.3097bf2)
Deployed at 2025-01-27T10:38:42Z, miarka_provision (monthly.v24.11-41-g3097bf2.3097bf2), by sjunnebo
Last Updated: 14th January 2022