NGI during Covid-19 outbreak

NGI is still up and running during the Covid-19 pandemic, but we are experiencing some limitations in terms of personnel and key reagents. Each NGI node is following its respective host university recommendations and will continue operation until further notice.

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Associated Keywords: sarek

WGS analysis

Runs with illumina human DNA-sequencing data. This goes through alignment, alignment quality control, data processing, variant calling, and variant filtration.

WGS germline / somatic analysis

Runs with illumina DNA-sequencing data, WGS or targeted sequencing. Aligns to the reference genome, gives QC metrics, does variant-calling and finishes with annotation.