Illumina

NGI offers sequencing on a number of instruments from Illumina, suitable for most applications. NGI also runs genotyping using the Illumina iScan system.

Sequencing

NGI offers sequencing on a range of Illumina sequencing instruments. All of them work using a “sequencing-by-synthesis” technology, where fluorescent DNA nucleotides are added to a sample one at a time. An imaging system records these flashes of coloured light and converts this information into a linear DNA-sequence.

Illumina sequencing instruments typically sequence relatively short DNA fragments, on the order of a few hundred base-pairs. They are, however, able to sequence a massive number of these fragments in parallel, giving large quantities of sequence data at competitive prices.

The different Illumina sequencing instruments operate at different scales – the most appropriate one for your project depends on the number of samples you have and the depth of sequencing that you require. The largest machines give the best price per base-pair of DNA but produce a very large volume of data in each run.

Genotyping

For genotyping we use the iScan system from Illumina, The iScan system is used for genotyping SNPs or DNA methylation analysis of CpG sites by the Infinium assay. Please visit our Genotyping page for more information.

Last Updated: 25th February 2026

Technologies within this category

MiSeq i100 Plus
The Illumina MiSeq i100 Plus is a compact, high-throughput bench-top sequencer available at the NGI Openlab and as a standard service at NGI Stockholm.
MiSeq
A small-scale sequencing instrument ideal for projects that require limited sequencing. Suitable for bacterial genomes and targeted resequencing.
NextSeq 2000
A medium-scale sequencing instrument, ideal for projects requiring limited sequencing depth. Suitable for library pools requiring custom read-setups.
NovaSeq X Plus
The largest of the Illumina sequencing instruments - enabling the generation of massive sequencing data amounts at competitive prices.

Please read our sample submission instructions before sending samples:

Sample Submission Guidelines
Method Status

Service

We are routinely running this method. Please visit the Order Portal to place an order.

NGI

This protocol is available at both NGI nodes.

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