NextSeq 2000

A medium-scale sequencing instrument, ideal for projects requiring limited sequencing depth. Suitable for library pools requiring custom read-setups.

FlowcellLanesAverage Yield (clusters/flowcell)*Typical read lengths
P1 – 1001100 M2 x 50 bp
P1 – 3001100 M 2 x 150 bp
P1 – 6001100 M 2 x 300 bp
P2 – 1001400 M2 x 50 bp
P2 – 2001400 M2 x 100 bp
P2 – 3001400 M2 x 150 bp
P2 – 6001300 M2 x 300 bp
P3 – 10011200 M2 x 50 bp
P3 – 20011200 M2 x 100 bp
P3 – 30011200 M2 x 150 bp
* These numbers represent an average yield based on our observations across projects. The yield for different libraries can vary depending on library type, concentration, fragment distribution, colour balance of indices, % PhiX spiked in for the sequencing run etc. Please consult with a Project Coordinator for more details.

Last Updated: 25th February 2026

Please read our sample submission instructions before sending samples:

Sample Submission Guidelines
Method Status

Service

We are routinely running this method. Please visit the Order Portal to place an order.

NGI Stockholm

This protocol is available at NGI Stockholm.

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