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Spatial

Methods to add spatial information to sequencing data

Applications 2 Methods 7 Bioinformatics 1
Spatial transcriptomics (Teton)
The AVITI24 platform, integrated with Teton CytoProfiling chemistry, enables spatial co-detection of RNA, protein and cell morphology at subcellular resolution using an imaging-based read-out.
Spatial transcriptomics (Visium)
Spatial transcriptomics allows you to map gene expression across intact tissue sections, combining histological context with transcriptome-wide profiling using 10x Genomics Visium platforms for fresh frozen and FFPE samples
AVITI24 – Teton

NGI offers multiomic spatial profiling through the AVITI24™ with Teton™ CytoProfiling, which combines high-resolution imaging with simultaneous RNA, protein, and morphology detection in a single run.

Visium – Probe-based – FFPE samples

We now offer spatially resolved transcriptomics through the 10X Genomics Visium CytAssist, which combines histology with probe-based transcriptomics in a spatial context.

Visium – Probe-based – FF/FxF samples

We now offer spatially resolved transcriptomics through the 10X Genomics Visium CytAssist, which combines histology with probe-based transcriptomics in a spatial context.

Visium 3´- PolyA-based

We offer spatial transcriptomics through the 10X Genomics Visium method. The method combines histology with unbiased transcriptomics in a spatial context.

Visium HD – Probe-based – FF/FxF samples

We now offer high resolution spatially resolved transcriptomics through the 10X Genomics Visium HD CytAssist, which combines histology with probe-based transcriptomics in HD spatial context

Visium HD – Probe-based – FFPE samples

We now offer high resolution spatially resolved transcriptomics through the 10X Genomics Visium HD CytAssist, which combines histology with probe-based transcriptomics in HD spatial context

Visium HD 3´ – PolyA-based

NGI offers high resolution spatial transcriptomics through the 10x Genomics Visium HD 3’, which combines histology with PolyA-based transcriptomics in HD spatial context

Spatial Transcriptomics analysis

Demultiplexing, image alignment, read alignment and barcode/UMI counting of sequencing reads generated by the 10X Genomics Visium assay.