Illumina QC analysis
Basic quality-control monitoring of Illumina FastQ sequence data.
Sequencing QC is a quality control to ensure that the raw data is of good quality and that there are no problems or biases in your data. To achieve this end we use a number of tools, for example FastQC and FastQ Screen. This allows us to check the general quality of the generated data, and screen for potential contaminants.
This is a Nextflow pipeline for generating sequencing reports for the SNP&Seq Technology platform, NGI Uppsala, SciLifelab Genomics.
When we run analysis
We run this analysis routinely for all projects.
The analysis works with any species.