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Status: NGI Stockholm

This protocol is available at NGI Stockholm.

Methods 4 Technologies 1 Bioinformatics 4

Single-Cell Multiomics with BD Rhapsody HT Xpress

Single-cell whole genome sequencing (scWGS)

single-cell wholegenome dna

Parse Evercode

Multiple rounds of barcoding of fixed and permeabilised cells.

single-cell parse combinatorial transcriptomics RNA mRNA illumina RNA-Seq

AVITI24 – Teton

NGI offers multiomic spatial profiling through the AVITI24™ with Teton™ CytoProfiling, which combines high-resolution imaging with simultaneous RNA, protein, and morphology detection in a single run.

transcriptomics RNA illumina spatial

Element Biosciences

A new player in the field of short-read sequencing.

aviti element biosciences cloudbreak short-reads

Amplicon-seq analysis

Ampliseq is a bioinformatics analysis pipeline used for 16S rRNA amplicon sequencing data.

amplicon ampliseq

ATAC-seq analysis

Bioinformatic analysis pipeline for ATAC-seq data

chromatin open chromatin ATACseq ATAC-seq

RAD-seq analysis

Pipeline for quality control of Restriction-site Associated DNA sequencing (RAD-Seq). Genotyping-by-sequencing without prior genome information.

rad-seq

Small-RNA analysis

Runs with illumina small RNA-sequencing data. Aligns to the reference genome, gives QC metrics and finishes with gene count matrices.

smrna-seq smrnaseq small RNA