This protocol is available at NGI Stockholm.
Multiple rounds of barcoding of fixed and permeabilised cells.
illumina RNA-Seq single-cell parse combinatorial transcriptomics RNA mRNANGI offers multiomic spatial profiling through the AVITI24™ with Teton™ CytoProfiling, which combines high-resolution imaging with simultaneous RNA, protein, and morphology detection in a single run.
transcriptomics RNA illumina spatialNGI offers high resolution spatial transcriptomics through the 10x Genomics Visium HD 3’, which combines histology with PolyA-based transcriptomics in HD spatial context
spatial transcriptomics RNA illuminaA new player in the field of short-read sequencing.
short-reads aviti element biosciences cloudbreakAmpliseq is a bioinformatics analysis pipeline used for 16S rRNA amplicon sequencing data.
amplicon ampliseqBioinformatic analysis pipeline for ATAC-seq data
chromatin open chromatin ATACseq ATAC-seqPipeline for quality control of Restriction-site Associated DNA sequencing (RAD-Seq). Genotyping-by-sequencing without prior genome information.
rad-seqRuns with illumina small RNA-sequencing data. Aligns to the reference genome, gives QC metrics and finishes with gene count matrices.
smrnaseq small RNA smrna-seq